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Resolve pylint errors#40

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lhuhmann wants to merge 55 commits intovanallenlab:mainfrom
lhuhmann:issue-39-pylint-errors
Open

Resolve pylint errors#40
lhuhmann wants to merge 55 commits intovanallenlab:mainfrom
lhuhmann:issue-39-pylint-errors

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Plain language description of pull request.

Additions:

  • Item

Revisions:

  • Item

Bug fixes:

  • Item

Pre-pull request check list,

  • Relevant documentation has been updated
  • All unit tests pass
  • All outputs pre- and post- changes match by md5 hash
  • All files changed have been reviewed
  • Docker pushed

Added link to db. Removed DOI from citation.
Updated to GPLv2 per DFCI's instructions.
Release 0.4.1 squashed commit. Refer to release notes and pull request.
Updated citation
Updated citation
Revised README to point to documentation folder.
…ces from the paper repository. Reduced annotated cell line data to include only those that are clinically or biologically relevant, thus reducing file sizes. Expanded upon documentation for building ExAC and COSMIC.
Flexible MAF import for either TCGA or GDC MAF formats
Revised description of inputs, added templates for pull requests and releases, and added documentation for contributions.
brendanreardon and others added 25 commits April 13, 2023 16:28
…entation that we will attempt to map --tumor_type argument to OncoTree codes and terms
…nt documentation that we will attempt to map --tumor_type argument to OncoTree codes and terms"

This reverts commit 9691257.
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2 participants