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single threaded kraken2#3089

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cat-bro merged 1 commit intousegalaxy-au:masterfrom
cat-bro:single_threaded_kraken2
Mar 27, 2026
Merged

single threaded kraken2#3089
cat-bro merged 1 commit intousegalaxy-au:masterfrom
cat-bro:single_threaded_kraken2

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@cat-bro cat-bro commented Mar 27, 2026

kraken2 jobs are taking an irrational amount of time to load databases from CVMFS, even when everything is locally cached. None of the CMVFS settings we have tried have made a noticeable difference. This is worth a try.

@cat-bro cat-bro merged commit ce7b812 into usegalaxy-au:master Mar 27, 2026
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