Add playbook for setting up tpv dry run from local files#1238
Draft
cat-bro wants to merge 1 commit intousegalaxy-au:masterfrom
Draft
Add playbook for setting up tpv dry run from local files#1238cat-bro wants to merge 1 commit intousegalaxy-au:masterfrom
cat-bro wants to merge 1 commit intousegalaxy-au:masterfrom
Conversation
|
Thank you @cat-bro! |
|
I think it would make sense to include that in the https://github.com/usegalaxy-eu/ansible-tpv-lint role, |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
I'm adding this as a draft because there are already too many playbooks in the root directory. I might find another place for this.
This is a playbook that templates and copies all of the files needed for tpv dry run then creates a script run_dry_run.sh with job conf and tpv files as args to the tpv dry-run command, the user just needs to add the other arguments, e.g.
bash run_dry_run.sh --tool=toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.19.3+galaxy0 --input-size 100Sharing with @kysrpex, @sanjaysrikakulam, @mira-miracoli (note that my vars will not work for EU, but something similar might)