Vs30 refactor

.github/workflows/deptry.yml

@@ -0,0 +1,24 @@
+name: Deptry Dependency Check
+
+on: [pull_request]
+
+jobs:
+  dependencies:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      # Setup the minimum required python distribution
+      - uses: actions/setup-python@v5
+      - name: Setup uv
+        uses: astral-sh/setup-uv@v5
+      - name: Install GDAL system libraries
+        run: sudo apt-get update && sudo apt-get install -y libgdal-dev
+      # GDAL's Python bindings must match the system libgdal version exactly.
+      # Pin the version in pyproject.toml to match the system libgdal.
+      - run: |
+          sed -i "s/\"GDAL\"/\"GDAL==$(gdal-config --version)\"/" pyproject.toml
+          uv sync
+      # Install deptry
+      - run: uv pip install deptry
+      # Run deptry to check that all dependencies are present.
+      - run: uv run deptry . -ddg test,types

.github/workflows/numpydoc.yml

@@ -0,0 +1,36 @@
+name: Numpydoc Lint
+
+on:
+  push:
+    branches:
+      - master
+  pull_request:
+    branches:
+      - master
+
+jobs:
+  numpydoc-lint:
+    runs-on: ubuntu-latest
+
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v4
+
+      - uses: awalsh128/cache-apt-pkgs-action@latest
+        with:
+          packages: fd-find
+          version: 1.0
+
+      - name: Set up Python
+        uses: actions/setup-python@v4
+        with:
+          python-version: '3.12'
+
+      - name: Install dependencies
+        run: |
+          pip install numpydoc
+          sudo apt-get install
+
+      - name: Run Numpydoc Lint
+        run: |
+          fdfind . vs30/ -E "__init__.py" --extension py | xargs numpydoc lint

.github/workflows/pytest.yaml

@@ -22,13 +22,61 @@ jobs:
       - name: Install dependencies with mamba
         shell: bash -el {0}
         run: |
-          mamba install -c conda-forge gdal numpy pandas pyproj scikit-learn scipy matplotlib pytest geopandas
+          mamba install -c conda-forge gdal numpy pandas pyproj scikit-learn scipy matplotlib pytest pytest-cov geopandas
 
       - name: Install project in dev mode
         shell: bash -el {0}
         run: pip install -e .
 
       - name: Run tests
         shell: bash -el {0}
-        run: pytest
+        run: pytest --cov=vs30 --cov-report=html tests
 
+      - name: Upload coverage data
+        uses: actions/upload-artifact@v4
+        with:
+          name: coverage-data
+          path: .coverage
+          include-hidden-files: true
+          if-no-files-found: ignore
+
+  coverage:
+    needs: test
+    runs-on: ubuntu-latest
+
+    steps:
+      - name: Check out the repo
+        uses: actions/checkout@v4
+
+      - name: Set up Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: "3.12"
+
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade coverage[toml]
+
+      - name: Download coverage data
+        uses: actions/download-artifact@v4
+        with:
+          name: coverage-data
+
+      - name: Combine coverage and fail if it's under 85%
+        run: |
+          python -m coverage html --skip-covered --skip-empty
+
+          # Report and write to summary.
+          python -m coverage report | sed 's/^/    /' >> $GITHUB_STEP_SUMMARY
+
+          # Report again and fail if under 85%.
+          python -Im coverage report --fail-under=85
+
+      - name: Upload HTML report if check failed
+        uses: actions/upload-artifact@v4
+
+        with:
+          name: html-report
+          path: htmlcov
+
+        if: ${{ failure() }}

.github/workflows/ruff.yml

@@ -0,0 +1,8 @@
+name: Ruff
+on: [pull_request]
+jobs:
+  ruff:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - uses: chartboost/ruff-action@v1

.github/workflows/types.yml

@@ -0,0 +1,36 @@
+name: Type Check
+
+on:
+  push:
+    branches: [master]
+  pull_request:
+    branches: [master]
+
+jobs:
+  typecheck:
+    runs-on: ubuntu-latest
+
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+
+      - name: Setup Python
+        uses: actions/setup-python@v5
+
+      - name: Install uv
+        uses: astral-sh/setup-uv@v5
+        with:
+          enable-cache: true
+
+      - name: Install GDAL system libraries
+        run: sudo apt-get update && sudo apt-get install -y libgdal-dev
+
+      - name: Install project with types
+        # GDAL's Python bindings must match the system libgdal version exactly.
+        # Pin the version in pyproject.toml to match the system libgdal.
+        run: |
+          sed -i "s/\"GDAL\"/\"GDAL==$(gdal-config --version)\"/" pyproject.toml
+          uv sync --all-extras --dev
+
+      - name: Run type checking with ty
+        run: uv run ty check --exclude setup.py --exclude VsViewer/