Given a list of differentially expressed HERVs, this code will fetch their genomic locations, find which genes are in their vicinity, and search pubmed for those genes to see if there is literature support for their role in your disease of interest.
To run, download the attached csv file, change the RScript to match your working directory structure, and then execute. Using biomaRt is a slow process and the script may take multiple hours to run.
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Given a list of differentially expressed HERVs, this code will fetch their genomic locations, find which genes are in their vicinity, and search pubmed for those genes to see if there is literature support for their role in your disease of interest.
tyden46/HERV_Search_Tool
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Given a list of differentially expressed HERVs, this code will fetch their genomic locations, find which genes are in their vicinity, and search pubmed for those genes to see if there is literature support for their role in your disease of interest.
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