This repository contains instructions and any extra files needed for executing the bioinformatic analyses utilized during the workshop.
A link to the HackMD file with information on the real time metagenomics analysis using EPI2ME:
https://hackmd.io/@tslaird/Bko8Tt55kx
Here is a link to the HackMD markdown file which details instructions for taxonomic classification using the EPI2ME wf-metagenomics pipeline:
https://hackmd.io/@tslaird/H10t1SbYyx
The following markdown files contain instructions for performing genome binning and assembly from the (meta)genomic data you have obtained.
binning.Rmd
genome_assembly.Rmd
MAG_analysis.Rmd