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- snakemake-tutorial Public
A Snakemake workflow based on the official short tutorial: https://snakemake.readthedocs.io/en/v7.32.3/tutorial/short.html
trytoolchest/snakemake-tutorial’s past year of commit activity - getting-started-python-jupyter Public
This notebook takes one 16S sample from an Illumina MiSeq run, runs it through Kraken 2 on Toolchest, and plots a rough sketch of the microbial composition of the sample.
trytoolchest/getting-started-python-jupyter’s past year of commit activity - pysam Public Forked from pysam-developers/pysam
Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
trytoolchest/pysam’s past year of commit activity - kraken2 Public Forked from DerrickWood/kraken2
The second version of the Kraken taxonomic sequence classification system
trytoolchest/kraken2’s past year of commit activity
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