The consensus GEM for Saccharomyces cerevisiae

The metabolic twin model of yeast

Saccharomyces Genome Database (SGD) REST API wrapper

Saccharomyces cerevisiae information, gene calling and ORF identification assistant

Costa, C. E., Romaní, A., Cunha, J. T., Johansson, B., & Domingues, L. (2017). Integrated approach for selecting efficient Saccharomyces cerevisiae for industrial lignocellulosic fermentations: Importance of yeast chassis linked to process conditions. Bioresource Technology, 227, 24–34.

GEnome-wide tool for Multi-scale Modeling data Extraction and Representation for Saccharomyces cerevisiae | Mondeel TDGA, Crémazy F, Barberis M. | Bioinformatics | 2018 | http://doi.org/10.1093/bioinformatics/bty052 |

Repository of a genome-scale metabolic model for Saccharomyces cerevisiae

Yeast chronological lifespan CLS analysis (using platereader)

My Spring 2024 term project for NYU's Applied Genomics graduate course (M.S. Biology). Using data from Brar et al, analysis of average gene expression on certain regions of baker's yeast chromosomes during traditional time course meiosis.

Performance and Robustness trade-offs in yeast - analysis of phenotypic data from 24 Saccharomyces cerevisiae strains grown in 29 conditions

A summarizing analysis of Fkh1,2 target genes as indicated by 6 ChIP binding studies and an overexpression and deletion study | https://doi.org/10.1016/j.csbj.2022.03.033

💻 Archive of my bioinformatics tool for exploring evolutionarily conserved 🧬 proteins across five model organisms using orthology databases (eggNOG, inParanoid, Homologene etc.). 🎓 Part of my PhD project, King's College London (2013-2019).

A structured model and likelihood approach to estimate yeast prion propagon replication rates and their asymmetric transmission

💻 Archive of my bioinformatics tool for exploring evolutionarily conserved 🧬 proteins across model organisms using Gene Ontology annotation extension. 🎓 Part of my PhD project, King's College London (2013-2019).

ABBA-BABA test conducted on Saccharomyces cerevisiae strains using whole-genome alignment.

DNA Replication Profiling from CGS data.

In this work, we formulate a mechanistic model consisting of three first-order Ordinary Differential Equations (ODEs) to describe ethanol production for mezcal by the Saccharomyces cerevisiae yeast using glucose and fructose as substrates.

💻 A unified bioinformatics tool for exploring evolutionarily conserved 🧬 proteins across model organisms. Combines multi-database ortholog search with Gene Ontology annotation extension. 🎓 PhD project, King's College London (2013-2019).

Phenotypic screening of a CRISPRi strain library [Smith et 2017, Mol Syst Biol (2017)13:913] for acetic acid tolerance targeting essential and respiratory essential genes in Saccharomyces cerevisiae