A Nextflow pipeline for protein binder design
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Updated
Dec 31, 2025 - Python
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proteinmpnn
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A modular, extensible peptide design pipeline with target preparation, backbone generation, sequence design, scoring, and ranking. Full local CPU pipeline, and backend hooks for RFpeptides, ProteinMPNN/LigandMPNN, and ColabFold.
machine-learning bioinformatics computational-biology drug-discovery structure-prediction alphafold colabfold peptide-design rfdiffusion proteinmpnn
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Nov 28, 2025 - Python
🧬 Lectures for course ML-protein-design
tensorflow pytorch biopython pymol rdkit modeller pytorch-geometric deepchem alphafold2 py3dmol colabfold rfdesign pyfoldx molgan trdesign rfdiffusion proteinmpnn colabdesign dmasif
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Dec 17, 2024 - Jupyter Notebook
🧬 Experiments and setup of RFdiffusion/ProteinMPNN running on macOS Apple Silicon (CPU).
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Updated
Dec 31, 2025 - Python
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