Personal Cancer Genome Reporter (PCGR)

Patient-Specific Modeling in Python

cBioPortal is a data visualization tool for cancer genomics. This repository contains all components to deploy the customized version of cBioPortal used in the PM4Onco use case of the Medical Informatics Initiative Germany.

preon (PREcision Oncology Normalization) is a fuzzy search tool for medical entities.

A text-based computational framework for patient -specific modeling for classification of cancers. iScience (2022).

MIRACUM-Pipe is a whole exome and panel sequencing pipeline for precision oncology (https://github.com/AG-Boerries/MIRACUM-Pipe). This repository is a port of the pipeline running inside a singularity container.

This repository contains the code and data related to the CIViC-Fact project

Cancer prognosis with shallow tumor RNA sequencing

Computational phenotyping used in the paper "A Computational Pathology Model to Predict Docetaxel Benefit in Localized High-Risk and Metastatic Prostate Cancer"

💊 Advanced Drug Response Prediction & Multi-Omics Platform Interactive computational biology dashboard with ML integration, synthetic CCLE/GDSC data, dose-response modeling, and biomarker discovery. Features 6-tab Streamlit interface, Random Forest predictions, and publication-quality visualizations.

Pan Cancer Pan Treatment Github Repository