Wastewater-Based Epidemiology using Phylogenetic Placements
Viral Metagenomics Assembly and Annotation Pipeline
A streamlined Oxford Nanopore Viral Metagenomics Pipeline
EcoliTyper: A species-optimized computational pipeline for comprehensive genotyping and surveillance of Escherichia coli. Perfect for clinical microbiology, outbreak investigations, and genomic research.
🧬 Analyze *Escherichia coli* strains efficiently with EcoliTyper, a unified tool for MLST, serotyping, and Clermont phylotyping in one workflow.
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