A simple pipeline for bacterial assembly and quality control

Estimate the relative abundance of sequence reads originating from different species in a sample.

SNVPhyl nf-core Pipeline (Development)

Measles Sequence Analysis and Automation

Quickly refines a reference set of samples based on distance.

Genotyping Quality Control (typingQC)

Pipeline for submitting data to INSDC databases for IRIDA Next

Nomenclature assignment pipeline

EPS suite Arborator pipeline

An example pipeline for running on IRIDA Next

nf-core StarAMR

Pipeline for downloading data from INSDC databases for IRIDA Next.

An example pipeline for running on IRIDA-Next with nf-schema