Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)
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Feb 13, 2025 - Python
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chloroplast
Here are 17 public repositories matching this topic...
Iterative Organellar Genome Assembly
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Jun 9, 2020 - Python
get chloroplast and mitochondrial genes from contigs of genome-skimming or transcriptome data
genome transcriptome protein-coding-genes mitochondrial chloroplast contigs plastome genome-skimming
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Feb 15, 2021 - Perl
LOCALIZER: subcellular localization prediction of plant and effector proteins in the plant cell
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Jul 31, 2024 - Python
Chloroplast genome assembly, annotation and phylogenetic relationships of different populations of flowering plants
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Mar 27, 2025 - Nextflow
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Oct 13, 2021 - Python
ASAFind latest version, with options for graphical output and ppc protein prediction
bioinformatics genome protein sequence algae chloroplast mitochondria eukaryotes organelle plastid signal-peptide protein-translocation transit-peptide protein-targeting
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Jun 3, 2025 - Python
Molecular Sequence Manipulation Tools
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Dec 9, 2022 - R
Predicts subplastid localization of proteins along with sequence origin (plastid- or nuclear-encoded).
bioinformatics random-forest r-package hmmer chloroplast plastid subchloroplast-localization subplastid-localization hmm-profile
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May 24, 2023 - R
Assembly of chloroplast genome using long-reads and short-reads for Genomics Course 2021 (MSc Bioinformatics for Computational Genomics)
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Apr 2, 2022 - Shell
A modular high-throughput approach for advancing synthetic biology in the chloroplast of Chlamydomonas
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Nov 13, 2025 - Python
Chloroplast 16S removal from Metagenomics samples (or any NGS samples)
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Feb 14, 2018 - Python
Causal inference of post-transcriptional regulation timelines from long-read sequencing in Arabidopsis thaliana
genomics imputation graphical-models intervention transcription dag causal-inference em-algorithm chloroplast arabidopsis-thaliana do-calculus causal-discovery
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Oct 15, 2025 - Python
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Jan 14, 2020 - MATLAB
Do you like plants? If yes, check out my program which tries simulate a chloroplast!
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Jun 17, 2021 - Python
🌱 Reconstruct genetic regulation timelines in _Arabidopsis thaliana_ using causal inference, addressing missing data and parameter selection challenges effectively.
genomics imputation graphical-models intervention transcription dag causal-inference em-algorithm chloroplast arabidopsis-thaliana do-calculus causal-discovery
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Dec 25, 2025 - Python
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