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ucb-seq-processing: Data Processing Tools for uCB-seq

Experiment Naming Convention

TC012A/B: uCB-seq 10pg HEK Total RNA

TC014A/B: uCB-seq Single HEK Cells (unstained)

TC010A/B: mcSCRB-seq 10pg HEK Total RNA

TC011C/D: mcSCRB-seq Single HEK Cells

uCBSeqHEK: uCB-seq Single HEK Cells Only (stained)

uCBSeqPreAD: uCB-seq Single Preadipocytes Only (stained)

uCBSeqHEKPreAD: uCB-seq Mixed HEK and Preadipocyte Single Cells (stained)

Running Jupyter Notebooks

The .txt file contains a comprehensive list of packages that will allow one to run the Jupyter notebook attached, assuming references to locations of uCB-seq .rds files are rewritten. A full Packrat snapshot is in the works, but the text file contains all required information.

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Data Processing Tools for uCB-seq

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