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Merged
tnagler merged 4 commits into from
Jan 12, 2026
Merged

update CI script #81

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7eae648
update CI script
Jan 12, 2026
3adfe0d
libcurl?
Jan 12, 2026
1d7a478
typo
Jan 12, 2026
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enable all
Jan 12, 2026
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13 changes: 7 additions & 6 deletions .github/workflows/R-CMD-check.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -20,17 +20,17 @@ jobs:
config:
- {os: macOS-latest, r: 'release'}
- {os: windows-latest, r: 'release'}
- {os: ubuntu-20.04, r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest", http-user-agent: "R/4.0.0 (ubuntu-16.04) R (4.0.0 x86_64-pc-linux-gnu x86_64 linux-gnu) on GitHub Actions" }
- {os: ubuntu-20.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
- {os: ubuntu-20.04, r: 'oldrel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
- {os: ubuntu-latest, r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/jammy/latest", http-user-agent: "R/devel (ubuntu-122.04) on GitHub Actions" }
- {os: ubuntu-latest, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/jammy/latest"}
- {os: ubuntu-latest, r: 'oldrel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/jammy/latest"}

env:
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
RSPM: ${{ matrix.config.rspm }}
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}

steps:
- uses: actions/checkout@v2
- uses: actions/checkout@v5

- uses: r-lib/actions/setup-r@v2
with:
Expand All @@ -48,7 +48,7 @@ jobs:

- name: Cache R packages
if: runner.os != 'Windows'
uses: actions/cache@v1
uses: actions/cache@v5
with:
path: ${{ env.R_LIBS_USER }}
key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
Expand All @@ -57,10 +57,11 @@ jobs:
- name: Install system dependencies
if: runner.os == 'Linux'
run: |
sudo apt install libcurl4-openssl-dev
while read -r cmd
do
eval sudo $cmd
done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "16.04"))')
done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "22.04"))')

- name: Install dependencies
run: |
Expand Down
16 changes: 8 additions & 8 deletions cran-comments.md
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@@ -1,14 +1,14 @@
Also includes a fix for the @doctype isseu (now documenting "_PACKAGE" instead of NULL).

## Test environments

* ubuntu 22.04 (devel, release, old-rel)
* macOS X (release)
* Windows Server 2019 (release)
* ubuntu 20.04 (devel, release, old-rel)
* macOS 14.7.2 (release)
* Windows Server 2022 (release)
* CRAN win builder (devel)

## Check status summary

NOTE OK
Source packages 0 1
Reverse depends 19 3
We checked 19 reverse dependencies (1 from CRAN + 18 from Bioconductor),
comparing R CMD check results across CRAN and dev versions of this package.

* We saw 0 new problems
* We failed to check 0 packages