Skip to content

Remove biopython references #23

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
bpow wants to merge 1 commit into
base: main
Choose a base branch
from
Open

Remove biopython references #23

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
4 changes: 2 additions & 2 deletions PangolinColab.ipynb
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -50,7 +50,7 @@
"id": "NpEQ3rtI9BI6"
},
"source": [
"!pip install pyvcf gffutils biopython pandas pyfastx\n",
"!pip install pyvcf gffutils pandas pyfastx\n",
"!git clone https://github.com/tkzeng/Pangolin.git\n",
"%cd Pangolin\n",
"!pip install .\n",
Expand Down Expand Up @@ -139,4 +139,4 @@
"outputs": []
}
]
}
}
2 changes: 1 addition & 1 deletion README.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -13,7 +13,7 @@ See below for information on usage and local installation.
* Install other dependencies:
```
conda install -c conda-forge pyvcf
pip install gffutils biopython pandas pyfastx
pip install gffutils pandas pyfastx
```
* Install Pangolin:
```
Expand Down