Skip to content

Remove PyVCF dependency#19

Open
kkchau wants to merge 1 commit intotkzeng:mainfrom
kkchau:remove-pyvcf
Open

Remove PyVCF dependency#19
kkchau wants to merge 1 commit intotkzeng:mainfrom
kkchau:remove-pyvcf

Conversation

@kkchau
Copy link
Contributor

@kkchau kkchau commented Apr 3, 2024

Replace PyVCF, which has been abandoned for years now and can be buggy, with pysam, which offers stricter VCF parsing rules.

Replace PyVCF, which has been abandoned for years now, with pysam, which
offers stricter VCF parsing rules.
@kkchau kkchau marked this pull request as ready for review April 3, 2024 23:14
@kkchau
Copy link
Contributor Author

kkchau commented May 30, 2024

@tkzeng would you be able to review? This should resolve some issues with installing the program

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants