Skip to content

scanpy.external.pp.dca results still need normolize,scale,and log1p ? #67

@rdf1993

Description

@rdf1993

If I run scanpy.external.pp.dca with default parameters, do I still need to perform normalization, scaling, and log1p afterward? How can I obtain the non-normalized values?

scanpy.external.pp.dca(adata, mode='denoise', ae_type='nb-conddisp', normalize_per_cell=True, scale=True, log1p=True, hidden_size=(64, 32, 64), hidden_dropout=0.0, batchnorm=True, activation='relu', init='glorot_uniform', network_kwds=mappingproxy({}), epochs=300, reduce_lr=10, early_stop=15, batch_size=32, optimizer='RMSprop', random_state=0, threads=None, learning_rate=None, verbose=False, training_kwds=mappingproxy({}), return_model=False, return_info=False, copy=False)

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions