R package to simulate networks with migrations

HIVepisim uses the R package EpiModel to simulate networks.

A wiki page contains some details of the scripts in directory Analyses.

Notes

• The analyses described in this paper was carried out using EpiModel version 2.2.1
• Epimodel version 2.2.1 requires the following packages and respective versions:
  • ergm version 4.2.1
  • tergm version 4.0.2

Please note that the analysis involving the EpiModel package might not work using newer versions of EpiModel, ergm and tergm.

Citation

Nascimento FF, Mehta, SR; Little SJ, Volz EM (2024) Assessing transmission attribution risk from simulated sequencing data in HIV molecular epidemiology AIDS. 38:865-873.

This package is no longer being maintained.