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Potential for temp_dir to not exist during add_matched_rna

Status: Open.

#473 In tgen/phoenix;

· bryce-turner opened on May 2, 2023

Tumor Normal Filtering

Status: Open.

#472 In tgen/phoenix;

· PedalheadPHX opened on Mar 17, 2023

Samtools markdup stats summary takes only one library

Status: Open.

#469 In tgen/phoenix;

· denriquez opened on Sep 8, 2022

call consensus threads

Status: Open.

#465 In tgen/phoenix;

· PedalheadPHX opened on Jul 31, 2022

Second Metrics file for archive

Status: Open.

#464 In tgen/phoenix;

· PedalheadPHX opened on Jul 30, 2022

File for archive

Status: Open.

#463 In tgen/phoenix;

· PedalheadPHX opened on Jul 30, 2022

bwa-mem2

Status: Open.

#462 In tgen/phoenix;

· PedalheadPHX opened on Jul 30, 2022

GRCh38 difficult regions

Status: Open.

#460 In tgen/phoenix;

· PedalheadPHX opened on Feb 16, 2022

Update deepvariant to at least v1.0.0

Status: Open.

#455 In tgen/phoenix;

· bryce-turner opened on Oct 14, 2021

Wasted Compute

Status: Open.

#454 In tgen/phoenix;

· PedalheadPHX opened on Aug 23, 2021

Add IMGT VDJ reference to CellRanger Analysis

Status: Open.

#453 In tgen/phoenix;

· ekelley903 opened on Aug 13, 2021

gatk_cnv step 3 has the potential of attempting to interpret log2 of 0

Status: Open.

#452 In tgen/phoenix;

· bryce-turner opened on Aug 12, 2021