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1. BSgenome.Hsapiens.GENCODE.hg38 BSgenome.Hsapiens.GENCODE.hg38 Public

2. Public Human Ribo-seq datasets Public Human Ribo-seq datasets

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   Study name	GSE	Title	Year	Paper	SRP	PMID	Adapters

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   Gawron16	GSE74279	Positional proteomics reveals differences in N-terminal proteoform stability.	2016	http://dx.doi.org/10.15252/msb.20156662	SRP065022	26893308	CTGTAGGCACCATCAAT

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   Jakobsson17	GSE97140	Methylation of human eukaryotic elongation factor alpha (eEF1A) by a member of a novel protein lysine methyltransferase family modulates mRNA trans...	2017	http://dx.doi.org/10.1093/nar/gkx432	SRP102616	28520920	None

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   Battle15	GSE61742	Genomic variation. Impact of regulatory variation from RNA to protein.	2015	http://dx.doi.org/10.1126/science.1260793	SRP047476	25657249	None

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   Xu16	GSE64962	Improved transcription and translation with L-leucine stimulation of mTORC1 in Roberts syndrome.	2016	http://dx.doi.org/10.1186/s12864-015-2354-y	SRP052229	26729373	AGATCGGAAGAGCACAC

3. Install awcli without root on linux Install awcli without root on linux

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   ## Based on this answer 

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   ## https://stackoverflow.com/a/67165838

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   curl "https://awscli.amazonaws.com/awscli-exe-linux-x86_64.zip" -o "awscliv2.zip"

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   unzip awscliv2.zip

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   ./aws/install -i ~/.local/aws-cli -b ~/.local/bin

4. seurat2spring seurat2spring Public

   Jupyter Notebook

5. Colors palette for LM22 cell types (... Colors palette for LM22 cell types (From CIBERSORTx website)

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   Cell_type	Hex

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   B cells naive	#888a85

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   B cells memory	#bfc1bb

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   Plasma cells	#cdd1ca

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   T cells CD8	#d3d7d0

6. Count characters in a FASTA file Count characters in a FASTA file

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   from Bio import SeqIO

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   from collections import Counter

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   import pandas as pd

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   frequencies = Counter()