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Same output for all regions

Status: Open.

#34 In ssadedin/bazam;

· soumyarao86 opened on Jul 13, 2023

No output for low-coverage bam files

Status: Open.

#33 In ssadedin/bazam;

· Npaffen opened on Jun 20, 2023

locating pairs in CRAM stopped working in versions after 1.0.1

Status: Open.

#32 In ssadedin/bazam;

· seru71 opened on Feb 28, 2023

Swapping first and second mates when pair aligned to reverse strand

Status: Open.

#31 In ssadedin/bazam;

· mikisvaz opened on Feb 22, 2021

Build failed

Status: Open.

#30 In ssadedin/bazam;

· Fred-07 opened on Jan 13, 2021

Realignment to new ref needs recalibration?

Status: Open.

#29 In ssadedin/bazam;

· TnakaNY opened on Nov 9, 2020

Issue with build

Status: Open.

#28 In ssadedin/bazam;

· caleblareau opened on Sep 23, 2020

common use case - properly paired mates only

Status: Open.

#27 In ssadedin/bazam;

· benbfly opened on May 14, 2020

feature request - colorspace reversion

Status: Open.

#25 In ssadedin/bazam;

· berntpopp opened on Dec 15, 2019

feature request - single ended nanopore reads

Status: Open.

#24 In ssadedin/bazam;

· colindaven opened on Oct 10, 2019

[feature request?] unmapped with -L 0:0*-0 / skip some reads sorted bam

Status: Open.

#23 In ssadedin/bazam;

· evolighting opened on Jul 25, 2019

-L chr1 runs but does not output anything

Status: Open.

#21 In ssadedin/bazam;

· bwlang opened on May 30, 2019