This suit is for Docker image of Phylogenetic Analysis by Maximum Likelihood (PAML) and presented at http://abacus.gene.ucl.ac.uk/software/paml.html PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. It is maintained by Ziheng Yang and distributed under the GNU GPL v3. ANSI C source codes are distributed for UNIX/Linux/Mac OSX.

Suggested citations: Yang, Z. 1997. PAML: a program package for phylogenetic analysis by maximum likelihood Computer Applications in BioSciences 13:555-556. Yang, Z. 2007. PAML 4: a program package for phylogenetic analysis by maximum likelihood. Molecular Biology and Evolution 24: 1586-1591

Example of run: codeml > RESULTSFILE within directory containing the following input files Untitled.seq codeml.ctl tree.txt