Skip to content

Additional checks in tissue sample validation #39

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
aschroed merged 7 commits into from
Apr 1, 2026
Merged

Additional checks in tissue sample validation #39

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
7 commits
Select commit Hold shift + click to select a range
18a77ef
added some additional checks in tissue_sample validators
aschroed Mar 31, 2026
b2e2a3c
fix typo
aschroed Mar 31, 2026
5908021
Merge branch 'master' into 260331_ajs_more_tissue_sample_val
aschroed Apr 1, 2026
5fb54ed
make tpc specific for submitted-id vs external-id consistency; warnin…
aschroed Apr 1, 2026
4fee0a9
removed placeholder #'
aschroed Apr 1, 2026
88a634e
add blank line
aschroed Apr 1, 2026
528731b
version bump and changelog
aschroed Apr 1, 2026
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
10 changes: 9 additions & 1 deletion CHANGELOG.rst
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -6,9 +6,17 @@ smaht-submitr
Change Log
----------

1.14.2
======
`PR 39 Additional tissue sample validationD <https://github.com/smaht-dac/submitr/pull/39>`_

* Addition additional validation for TPC samples to ensure consistency between submitted_id, external_id and tissue submitted_id
* Non-TPC samples - warning for inconsistency is shown but submission is not blocked
* new tests and some test consolitdation/parmaeterization

1.14.1
======
`PR Decrease polling frequency by updating PROGRESS_INTERVAL to 1 second <https://github.com/smaht-dac/submitr/pull/>`_
`PR 38 Decrease polling frequency by updating PROGRESS_INTERVAL to 1 second <https://github.com/smaht-dac/submitr/pull/38>`_

* PROGRESS_INTERVAL from 0.1 to 1 second to decrease polling frequency for server-side validation/submission progress meter

Expand Down
2 changes: 1 addition & 1 deletion pyproject.toml
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
[tool.poetry]
name = "smaht-submitr"
version = "1.14.1"
version = "1.14.2"
description = "Support for uploading file submissions to SMAHT."
# TODO: Update this email address when a more specific one is available for SMaHT.
authors = ["SMaHT DAC <smhelp@hms-dbmi.atlassian.net >"]
Expand Down
Loading
Loading