Epidemic spread on networks

Modeling framework to simulate epidemic spread on a network structure.

Name		Name	Last commit message	Last commit date
Latest commit History 3 Commits
data		data
Fig1.ipynb		Fig1.ipynb
Fig2.ipynb		Fig2.ipynb
Fig4.ipynb		Fig4.ipynb
README.md		README.md
abc_early_growth.py		abc_early_growth.py
base.py		base.py
calc_observables.py		calc_observables.py
cases_de_feb26_mar16.npy		cases_de_feb26_mar16.npy
casesalltimes100reps_realmedian.npy		casesalltimes100reps_realmedian.npy
casespm_de_feb26_mar16.npy		casespm_de_feb26_mar16.npy
casespm_de_jun7_sep15.npy		casespm_de_jun7_sep15.npy
casespm_de_mar16_jun21.npy		casespm_de_mar16_jun21.npy
casespm_de_mar16_jun6.npy		casespm_de_mar16_jun6.npy
data_analysis.ipynb		data_analysis.ipynb
early_growth.db		early_growth.db
late_growth.py		late_growth.py
mp_test.py		mp_test.py
n=3e5_2.db		n=3e5_2.db
n=3e5_late.db		n=3e5_late.db
network_plotting.ipynb		network_plotting.ipynb
network_setup.py		network_setup.py
param_inference.py		param_inference.py
plot_distributions.ipynb		plot_distributions.ipynb
resume_abc_linux.py		resume_abc_linux.py
run_id_early_growth.npy		run_id_early_growth.npy
run_id_n=3e5_2.npy		run_id_n=3e5_2.npy
run_id_n=3e5_late.npy		run_id_n=3e5_late.npy
seir_model.py		seir_model.py
simulation_analysis.ipynb		simulation_analysis.ipynb

Provide feedback