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May 4, 2023 16:00
…dyProcess instead
ascibisz
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May 24, 2023
| particle = monomers["particles"][particle_id] | ||
| trajectory["unique_ids"][time_index].append(int(particle_id)) | ||
| trajectory["type_names"][time_index].append(particle["type_name"]) | ||
| # HACK needed until simulariumio default display data fix |
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I thought the default display data fix got merged in simulariumio, unless there's another default display data bug then the one I'm thinking of?
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Problem
Simple ReaDDy model in Vivarium for testing live mode.
closes #19
Solution
Updated ReaDDy process and Simularium Emitter in vivarium-collective/vivarium-ReaDDy#1, and wrote test that depends in Vivarium-ReaDDy to simulate 4 particles diffusing in ReaDDy.
Type of change
Change summary:
test_readdy_simple.pywith a test exampleSimulariumEmitterto remove simulator choices and better handle time and particle radiiReaddyActinProcess