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shimahm/README.md

Hi there 👋

👩‍💻 About Me

PhD researcher in bioinformatics and genomics with a focus on multi-omics analysis and reproducible pipelines. My work involves analyzing large-scale sequencing data (RNA-seq, GWAS, CNV, long-read assemblies) to uncover genomic variation and link it to important crop traits.

🔬 Current Projects

  • Investigating genomic variation in Brassica species to understand the genetic architecture of oil composition and seed traits.
  • Applying comparative genomics to uncover structural variation and gene regulation.
  • Developing reproducible workflows (Nextflow, Snakemake) for omics data analysis on HPC (SLURM).

🧬 Passionate about integrating genomics, computational biology, and data science to deliver actionable insights for plant breeding, biotechnology, and healthcare.

📫 Always open to collaboration and knowledge sharing—let’s connect!

Pinned Loading

  1. -Brassica-carinata-Genome-Annotation-Pipeline -Brassica-carinata-Genome-Annotation-Pipeline Public

    Shell

  2. post_gwas_SNP_annotation post_gwas_SNP_annotation Public

    1

  3. BLAST-Pipeline-and-SNP-Window-Analysis BLAST-Pipeline-and-SNP-Window-Analysis Public

  4. Copy_Number_Variation_pipeline Copy_Number_Variation_pipeline Public

  5. GWAS-GO-Enrichment-Pipeline GWAS-GO-Enrichment-Pipeline Public