To create an environment that includes both Cedalion and Snakemake:

1. Go to the directory where Cedalion is cloned
2. Edit environment_dev.yml to include:
   • bioconda (under channels)
   • snakemake=9.5.1 (under dependencies)
3. To create your Snakemake environment with Cedalion dependencies, run:
   a. conda env create -f environment_dev.yml -n cedalion_snakemake
4. Activate Snakemake:
   a. conda activate cedalion_snakemake
5. Add an editable install of Cedalion to your environment:
   a. pip install -e .

You now have an environment that includes both Cedalion and Snakemake.