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Made updates so that the program can handle PUBLIC TRANSPORT type outputs. The program will automatically find out the type of input files that it is processing, so users will run the program in the usual way. New Jar is also being committed.

Made updates so that the program can handle PUBLIC TRANSPORT type outputs. The program will automatically find out the type of input files that it is processing, so users will run the program in the usual way. New Jar is also being committed.
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