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@stu2 stu2 commented Dec 9, 2020

This gives properly formatted "unassigned" fastq files

@serine
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serine commented Jan 15, 2021

@stu2 thanks for contributing. Just to clarify third line in the fastq file messing with you workflows? Like you specifically need it to be + or this patch is more generic, like third line in the fastq file is pretty much unused and therefore shouldn't haven't any text?

thanks

@stu2
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stu2 commented Jan 18, 2021

Yes, I am not sure whether it is officially allowed for fastq format, but having 3rd line with anything other than a '+' messes with some downstream tools.

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2 participants