Name		Name	Last commit message	Last commit date
Latest commit History 2 Commits
function_scripts_directory		function_scripts_directory
input_data_directory/TCGA_correlation_coefficient_tables		input_data_directory/TCGA_correlation_coefficient_tables
output_data_directory		output_data_directory
.gitattributes		.gitattributes
.gitignore		.gitignore
00.install_packages.R		00.install_packages.R
00.six_weight_calculation.R		00.six_weight_calculation.R
01.cluster_communities.02.traditional_hierarchical.BFS_FIFO_cluster_counting.R		01.cluster_communities.02.traditional_hierarchical.BFS_FIFO_cluster_counting.R
01.cluster_communities.03.hungarian_blossom.R		01.cluster_communities.03.hungarian_blossom.R
01.cluster_communities.04.other_algorithms.R		01.cluster_communities.04.other_algorithms.R
02.inner_and_outer_weight.01.calculation.R		02.inner_and_outer_weight.01.calculation.R
02.inner_and_outer_weight.02.plot.R		02.inner_and_outer_weight.02.plot.R
03.GO_similarity.00.run_all.sh		03.GO_similarity.00.run_all.sh
03.GO_similarity.01.calculation.R		03.GO_similarity.01.calculation.R
03.GO_similarity.02.analysis.R		03.GO_similarity.02.analysis.R
03.GO_similarity.03.plot.R		03.GO_similarity.03.plot.R
03.GO_similarity.04.summarize_all_cancer_type.R		03.GO_similarity.04.summarize_all_cancer_type.R
04.cluster_profiling.01.calculation.R		04.cluster_profiling.01.calculation.R
04.cluster_profiling.save_and_plot.R		04.cluster_profiling.save_and_plot.R
05.plot_selected_cluster.R		05.plot_selected_cluster.R
06.cluster_communities.01.six_formula_traditional_hierarchical_clustering.R		06.cluster_communities.01.six_formula_traditional_hierarchical_clustering.R
06.cluster_communities.05.MWMM_for_other_weight_formulas.R		06.cluster_communities.05.MWMM_for_other_weight_formulas.R
06.cluster_communities.06.compare_communities_for_weight_formulas.R		06.cluster_communities.06.compare_communities_for_weight_formulas.R
06.cluster_communities.07.hungarian_blossom_running_time.R		06.cluster_communities.07.hungarian_blossom_running_time.R
06.cluster_communities.08.other_algorithm_running_time.R		06.cluster_communities.08.other_algorithm_running_time.R
06.cluster_profiling.save_and_plot_temp.R		06.cluster_profiling.save_and_plot_temp.R
06.inner_and_outer_weight.03.comparison.R		06.inner_and_outer_weight.03.comparison.R
README.md		README.md
hungarian_blossom_pipeline.Rproj		hungarian_blossom_pipeline.Rproj

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