Version 0.6

Control for samtools index options via -sio

Version 0.5

• automatic bam file indexing
• multithreading of samtools index/view/stats

Version 0.4

• support of PacBio HiFi reads
• automatic decision of minimap2 default options based on minor version (minimap>2.18 has preset -x map-hifi)

Version 0.3

• parallel creation of histograms and execution of samtools stats
• report MultiQC version
• add refs to readme

Version 0.2

• -b does not override -ne
• -a or -b mandatory
• mapping of long reads with minimap2
• create MultiQC report
• recognize ~ as $HOME in the path of the second paired file

Version 0.1

Initial release