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  1. CircleFinder2.0 CircleFinder2.0 Public

    This code is written to filter circular contigs from the denove sequence assembly output

    Perl 1

  2. Circle_finder Circle_finder Public

    Forked from pk7zuva/Circle_finder

    Micro DNA identification

    Shell 1

  3. AmpliconArchitect AmpliconArchitect Public

    Forked from virajbdeshpande/AmpliconArchitect

    AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and elucidates the architecture of the amplicon. In the current …

    Python

  4. AmpliconClassifier AmpliconClassifier Public

    Forked from AmpliconSuite/AmpliconClassifier

    Classify output of AmpliconArchitect to detect types of focal amplifications present

    Python

  5. AmpliconReconstructor AmpliconReconstructor Public

    Forked from AmpliconSuite/AmpliconReconstructorOM

    Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data

    Python

  6. PrepareAA PrepareAA Public

    Forked from AmpliconSuite/AmpliconSuite-pipeline

    A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior to running AmpliconArchitect.

    Python