Y25-682 - Add RNAseq Workflow Branch

[sabrine33]

Integ. suite PR:
https://gitlab.internal.sanger.ac.uk/psd/integration-suite/-/merge_requests/304

[codecov]

Codecov Report

❌ Patch coverage is 90.90909% with 1 line in your changes missing coverage. Please review.
✅ Project coverage is 84.97%. Comparing base (5e55f23) to head (7dafc07).
⚠️ Report is 106 commits behind head on Triomic_Epic.

Files with missing lines	Patch %	Lines
...els/concerns/presenters/statemachine/permissive.rb	80.00%	1 Missing ⚠️

Additional details and impacted files

@@               Coverage Diff                @@
##           Triomic_Epic    #2700      +/-   ##
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+ Coverage         84.59%   84.97%   +0.38%     
================================================
  Files               501      504       +3     
  Lines             20538    20779     +241     
  Branches            377      377              
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+ Hits              17374    17657     +283     
+ Misses             3161     3119      -42     
  Partials              3        3              

Flag	Coverage Δ
javascript	80.18% <ø> (+0.46%)	⬆️
pull_request	84.92% <90.90%> (+0.32%)	⬆️
push	84.59% <90.90%> (-0.01%)	⬇️
ruby	92.61% <90.90%> (+0.04%)	⬆️

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[yoldas]

I have a few comments. Happy to discuss.

[KatyTaylor]

Looks good I think, just one more question added. Going to look at the Integration Suite PR next.

[yoldas]

Could you please check this scenario?

Run the step-2 path, i.e., continue from LCMT RNA Preamp to LCMT cDNA Frag/ER
Do the charge and pass at LCMT cDNA Lib PCR XP.
Go back and continue from LCMT RNA Preamp to LCMT cDNA Reserve
(because LCMT cDNA Reserve was pre-created, continue with transfer)

We have a suspicion that because the same request is used for both branches, it may break.

[andrewsparkes]

I'm also unsure why you need this new 'processed' state when there are already 4 of them. Can't you use one of the existing ones?

[sabrine33]

I'm also unsure why you need this new 'processed' state when there are already 4 of them. Can't you use one of the existing ones?

Yes I checked, but you need to go through them to get to passed state