phanotate-scripts

Various scripts for calling phage genes with circular genomes through PHANOTATE.

Requirements

To install:

git clone https://github.com/rzhao-2/phanotate-scripts.git
cd phanotate-scripts
conda env create -f environment.yml -n phanotate-scripts
conda activate phanotate-scripts

Usage

phanotate_circular

cd phanotate-scripts
conda activate phanotate-scripts
bin/phanotate_circular -i genome.fa -o transcripts.fa

phanotate_translate

cd phanotate-scripts
conda activate phanotate-scripts
bin/phanotate_translate -i sequences.fa -o proteins.fa