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Random scripts to tweak GATK's VariantRecalibrator tranche plots in a format suitable for pub.
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rieseberglab/tranche-plot-arrange
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This folder contains scripts to produce the tranche plots included in the manuscript. The R script provided to draw the plots was extracted from GATK 4.0.1.2's jar file, and received only cosmetic changes (titles, legends, pdf/png output). The snp.tranches files provided in the subfolders were extracted from the output from VariantRecalibration. The repository also includes a snapshot of the generated png/pdf, as a convenience.
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Random scripts to tweak GATK's VariantRecalibrator tranche plots in a format suitable for pub.
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