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Question about subsampling process in ATAC-seq analysis

Status: Open.

#20 In reskejak/ATAC-seq;

· zhihaoKing opened on Apr 8, 2025

ChIP-seq broadpeaks analysis

Status: Open.

#19 In reskejak/ATAC-seq;

· allaway opened on Nov 12, 2024

csaw_workflow.R script: Error in (function (classes, fdef, mtable) (csaw_workflow.R#116): unable to find an inherited method for function ‘seqinfo’ for signature ‘"NULL"’ #15

Status: Open.

#18 In reskejak/ATAC-seq;

· mglgc opened on Oct 4, 2024

Clarification on BAM files used for CSAW_workflow

Status: Open.

#17 In reskejak/ATAC-seq;

· jasminemesparza opened on Aug 8, 2024

Error in csaw_workflow: Error in (function (classes, fdef, mtable) (csaw_workflow.R#116): unable to find an inherited method for function ‘seqinfo’ for signature ‘"NULL"’

Status: Open.

#15 In reskejak/ATAC-seq;

· prmunn opened on Jan 25, 2024

Use for multiple sample differential analysis

Status: Open.

#14 In reskejak/ATAC-seq;

· amootta opened on Aug 30, 2023

csaw regionCounts error

Status: Open.

#13 In reskejak/ATAC-seq;

· baylward333 opened on Oct 10, 2022

Error with minimalbedpe.sh

Status: Open.

#8 In reskejak/ATAC-seq;

· Sanaya30 opened on Jun 28, 2022