Add ELIXIR BioHackrXiv paper #33
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cpavloud
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Dec 17, 2025
cpavloud
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Dec 17, 2025
cpavloud
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Dec 17, 2025
agnesbrnb
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Dec 17, 2025
agnesbrnb
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Dec 17, 2025
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Update the number of filtered workflows to match the text row 166:
"The initial dataset from WorkflowHub consisted of 1,349 workflows, which was reduced to 295 candidates..."
Add number of curated workflows?
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Update also needed for RSEc tools and bioconda recipes
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After Filtering, it should be 3,262 tools, not 5,094
agnesbrnb
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paulzierep
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Dec 18, 2025
Co-authored-by: paulzierep <paul.zierep@googlemail.com>
bebatut
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Dec 18, 2025
vivekbibs
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Dec 18, 2025
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| ### bio.tools Tools Curation | ||
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| The **bio.tools** (via RSEc-Atlas) yielded **over 4,000 potential microbiome tools** after filtering. Due to the **sheer volume** and **time constraints**, a **community-driven curation process** was initiated, with contributions expected from the microbiome research community in the coming months. To date, **201** tools have been reviewed with **169** tools confirmed as directly relevant to microbiome research. Additionally, the **integration of missing tools** identified from other platforms (e.g., WorkflowHub) could not be completed within the BioHackathon timeline, as the process required more extensive validation and coordination. |
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At line 162, updated numbers should be "over 3,000 potential microbiome tools" not 4,00
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Preview: http://preview.biohackrxiv.org/papers/3b0ebb21-79f2-4cd1-b7c3-26c0d4a12887/paper.pdf