bio.tools update for tool with id: breast_dense_tissue_segmentation

data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json

@@ -1,32 +1,130 @@
 {
+    "accessibility": "Restricted access",
     "additionDate": "2025-05-22T12:06:46.866961Z",
     "biotoolsCURIE": "biotools:breast_dense_tissue_segmentation",
     "biotoolsID": "breast_dense_tissue_segmentation",
     "collectionID": [
         "EUCAIM"
     ],
+    "credit": [
+        {
+            "email": "aarias@iti.es",
+            "name": "Ana Mar\u00eda Arias Beltr\u00e1n",
+            "typeEntity": "Person",
+            "typeRole": [
+                "Primary contact"
+            ]
+        },
+        {
+            "name": "Instituto Tecnol\u00f3gico de Inform\u00e1tica (ITI)",
+            "typeEntity": "Institute",
+            "typeRole": [
+                "Provider"
+            ]
+        }
+    ],
     "description": "The tool takes a digital mammogram and performs an automatic segmentation of the breast area and the dense tissue. After the mammogram segmentation, the tool returns a DICOM-SEG image with both the dense tissue and the breast tissue mask combined.",
+    "documentation": [
+        {
+            "type": [
+                "Quick start guide"
+            ],
+            "url": "https://drive.eucaim.cancerimage.eu/s/agktHMkYfy5pHes"
+        },
+        {
+            "note": "Tool License Agreement in DOCX format",
+            "type": [
+                "Terms of use"
+            ],
+            "url": "https://drive.eucaim.cancerimage.eu/s/gPcqYKakCDSXGjN"
+        },
+        {
+            "note": "Tool License Summary in TXT format",
+            "type": [
+                "Terms of use"
+            ],
+            "url": "https://drive.eucaim.cancerimage.eu/s/7ZPfQqsJ6YRjgpe"
+        },
+        {
+            "note": "Video demonstration of how to use the tool",
+            "type": [
+                "Training material"
+            ],
+            "url": "https://youtu.be/_X68b2wjrj0?si=zCH_NRR_V9e8NUwh"
+        }
+    ],
     "editPermission": {
         "type": "private"
     },
     "function": [
         {
+            "cmd": "jobman submit -i mammography-density-segmenter -r small-gpu -- -p\ninput_dcm_path -o output_directory",
+            "input": [
+                {
+                    "data": {
+                        "term": "Image",
+                        "uri": "http://edamontology.org/data_2968"
+                    },
+                    "format": [
+                        {
+                            "term": "DICOM format",
+                            "uri": "http://edamontology.org/format_3548"
+                        }
+                    ]
+                }
+            ],
+            "note": "input_dcm_path: input path to the 2D DICOM image (FFDM); output_directory: output directory to store the results",
             "operation": [
                 {
                     "term": "Image annotation",
                     "uri": "http://edamontology.org/operation_3553"
                 }
+            ],
+            "output": [
+                {
+                    "data": {
+                        "term": "Image",
+                        "uri": "http://edamontology.org/data_2968"
+                    },
+                    "format": [
+                        {
+                            "term": "DICOM format",
+                            "uri": "http://edamontology.org/format_3548"
+                        }
+                    ]
+                }
             ]
         }
     ],
-    "homepage": "https://pubmed.ncbi.nlm.nih.gov/36010173/",
+    "homepage": "https://harbor.eucaim.cancerimage.eu/harbor/projects/4/repositories/image_batch_iti-breast",
     "language": [
         "Python"
     ],
-    "lastUpdate": "2025-10-20T10:26:42.806388Z",
+    "lastUpdate": "2025-12-22T14:34:39.139482Z",
     "license": "Proprietary",
+    "link": [
+        {
+            "note": "Scientific paper",
+            "type": [
+                "Other"
+            ],
+            "url": "https://pubmed.ncbi.nlm.nih.gov/36010173/"
+        },
+        {
+            "note": "Harbor repository with the tool's Docker images",
+            "type": [
+                "Repository"
+            ],
+            "url": "https://harbor.eucaim.cancerimage.eu/harbor/projects/4/repositories/image_batch_iti-breast"
+        }
+    ],
     "maturity": "Mature",
     "name": "Breast Dense Tissue Segmentation",
+    "operatingSystem": [
+        "Mac",
+        "Windows",
+        "Linux"
+    ],
     "owner": "dsilveira",
     "publication": [
         {
@@ -57,4 +155,4 @@
     "version": [
         "v1.0.6"
     ]
-}
+}