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  1. epifluidlab/FinaleToolkit epifluidlab/FinaleToolkit Public

    FinaleToolkit is a package and standalone program to extract fragmentation features of cell-free DNA from paired-end sequencing data.

    Python 35 15

  2. epifluidlab/headneck epifluidlab/headneck Public

    A repository containing any relevant code for the HNSCC manuscript.

    Jupyter Notebook 1

  3. epifluidlab/CRAGR_v2 epifluidlab/CRAGR_v2 Public

    CRAGR_v2 is a CRAGR pipeline that handles hotspots calling for multiple replicates using the irreproducible discovery rate (IDR).

    R 3

  4. epifluidlab/FinaleMe epifluidlab/FinaleMe Public

    Java 13 4