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bcftoolsis used in a specific use case ingenotype_snps:This only seems to work with
bcftools>1.11(looks like older versions can't handle the-rflag with remote vcf files because they insist on the index first).This check should invoke
bcftoolswith something similar to this use case.The
biocondarecipe forHATCHetshould be modified to needbcftools>=1.11