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Bump-deps#56

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ddevin96 wants to merge 6 commits intomasterfrom
bump-deps
Open

Bump-deps#56
ddevin96 wants to merge 6 commits intomasterfrom
bump-deps

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@ddevin96 ddevin96 commented Jan 27, 2026

  • Replaced dependencies
    • PyCall → PythonCall
    • Conda → CondaPkg
    • PyPlot → PythonPlot
    • HyperNetX 1.2.5 → HyperNetX 2.4.0
    • JSON3 -> JSON
  • Updated visualization (missing refactor of some attributes and parameters)
  • Added CondaPkg.toml
    • Pinned pandas for compatibility

ddevin96 and others added 4 commits January 13, 2026 12:34
…kg and PythonPlot

Bump the HyperNetX integration from the HyperNetX version 1.2.5 to the current 2.4.0
Added test to check JSON and HIF integrity
updated test for conversion
removed unnecessary code for JSON format

Co-authored-by: Alessia Antelmi <alessant@users.noreply.github.com>
added check with matrix
@pszufe pszufe self-requested a review January 29, 2026 13:10
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pszufe commented Jan 29, 2026

You have replaced tutorials/hif-standard/data/publications.hif.json by a non HIF-compliant version. I reverted this back, also making sure it is now nicely formatted.
I made minor updates to:

  • tutorials/basics/SimpleHypergraphs_tutorial_v5.ipynb (it was using older codes for the demo)
  • src/io.jl (docs for one method were wrong)
  • Project.toml (added your name and prepared version number for new release)

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Great work!!!
Minor comments

  • update tutorials/basics/A case study - Game of Thrones.ipynb to not have commented out code references to using Conda, PyCall
  • in tutorials/basics/A case study - Game of Thrones.ipynb SimpleHypergraphs.draw(h1, HyperNetX;...) example does not work - there is some problem with keywords parameters.
  • be careful not to agine replace tutorials/hif-standard/data/publications.hif.json as this should be HIF_Format - formatted not JSON_Format formatted.

reverted json + hif revised
updated test to check correct uploading of an hypergraph
updated tutorial
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2 participants