Compiling

Java

For compiling Java code with MUSCLE, the Java archives in $MUSCLE_HOME/share/muscle/java and $MUSCLE_HOME/share/muscle/java/thirdparty should be added to the classpath. To get these files formatted as a classpath, run

muscle2 --print-env=CLASSPATH

MUSCLE automatically includes these in the class path when running. To add your own dependencies, modify the classpath of MUSCLE by adding the following lines to the configuration files

add_classpath "path/to/dependency1.jar"
add_classpath "path/to/dependency2.jar"

Other languages

The INCLUDE_PATH environment variable for C and C++ should include $MUSCLE_HOME/include and the executables should be linked with the $MUSCLE_HOME/lib/libmuscle2.so or $MUSCLE_HOME/lib/libmuscle2.dylib library (depending on the operating system). To add any other libraries to the dynamic library path, modify the configuration file as follows:

add_libpath "path/to/dependency1/lib"
add_libpath "path/to/dependency2/lib"