regenie-apptainer

Recipe for building an Apptainer to run regenie.

“regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.”

Instructions

Run the predownload.sh script to download a base Ubuntu Jammy SIF, and build a base Ubuntu Jammy SIF with Intel OneAPI MKL 2025.1. This is to avoid repeated downloads.
Run the buildregenie.sh script.

NOTE both scripts are actually Slurm job scripts.

Name		Name	Last commit message	Last commit date
Latest commit History 10 Commits
LICENSE		LICENSE
README.md		README.md
buildregenie.sh		buildregenie.sh
predownload.sh		predownload.sh
regenie.def		regenie.def
ubuntu_oneapi.def		ubuntu_oneapi.def