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Add Snakemake workflow to download and unpack bioinformatics binaries#1

Merged

espenhgn merged 11 commits intomainprecimed/tsd_software:mainfrom

copilot/setup-snakemake-workflowsprecimed/tsd_software:copilot/setup-snakemake-workflowsCopy head branch name to clipboard

Oct 22, 2025

Conversation Commits11 (11)Checks Files changed

Merged

Add Snakemake workflow to download and unpack bioinformatics binaries#1
espenhgn merged 11 commits intomainfrom
copilot/setup-snakemake-workflows

Commits

Commits on Oct 22, 2025

Initial plan
Copilot
committed
Add Snakemake workflow for downloading binaries

Copilot
and
espenhgn
committed
Add Makefile, verification script, and comprehensive documentation

Copilot
and
espenhgn
committed
Add documentation for adding binaries and CI workflow

Copilot
and
espenhgn
committed
Add example usage script

Copilot
and
espenhgn
committed
Fix security issue: Add explicit permissions to GitHub Actions workflow

Copilot
and
espenhgn
committed
Add comprehensive test script for workflow validation

Copilot
and
espenhgn
committed
Add workflow diagram documentation

Copilot
and
espenhgn
committed
changed software versions
espenhgn
committed
minor edits
espenhgn
committed
fix broken test
espenhgn
committed

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