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Fix some typos to complete HW #3

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Fix some typos to complete HW #3

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2 changes: 1 addition & 1 deletion fixnifti.py
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Original file line number Diff line number Diff line change
Expand Up @@ -45,7 +45,7 @@ def set_nifti_params(img,
if not qform is None:
hdr.set_qform(qform)
if not TR is None:
hdr['pixdim'][4] = 1.5
hdr['pixdim'][4] = TR
if not slice_axis is None:
hdr.set_dim_info(slice=slice_axis)
if not slice_times is None:
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2 changes: 1 addition & 1 deletion fixup_openfmri.py
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Expand Up @@ -43,7 +43,7 @@ def main():
for run in subject['functionals']:
fname = run['filename']
print("Fixing functional " + fname)
fixnifti.fixup_nifti_file(filename, 'f', TR, SLICE_AXIS, slice_times)
fixnifti.fixup_nifti_file(fname, 'f', TR, SLICE_AXIS, slice_times)
for anat_fname in subject['anatomicals']:
print("Fixing anatomical " + anat_fname)
fixnifti.fixup_nifti_file(anat_fname)
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3 changes: 2 additions & 1 deletion test_openfmri.py
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Expand Up @@ -7,7 +7,8 @@

from openfmri import get_subjects

FILEROOT = abspath(expanduser(pjoin('~', 'data', 'ds105')))
FILEROOT = abspath(expanduser(pjoin('~', 'Science', 'fmri_class', 'data',
'ds105')))
SUBJ_NAMES = ['sub%03d' % i for i in range(1, 7)]

from nose.tools import assert_equal, assert_true
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