add gtc2vcf and additional array processing plugins to bcftools image#288
Merged
Alexander-Stuckey merged 4 commits intomainfrom Mar 11, 2026
Merged
add gtc2vcf and additional array processing plugins to bcftools image#288Alexander-Stuckey merged 4 commits intomainfrom
Alexander-Stuckey merged 4 commits intomainfrom
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🐳 Expected TagsSome Dockerfiles have been modified in this PR. New tags are expected to be deployed.
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michael-harper
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Mar 11, 2026
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michael-harper
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LGTM. Reading up on this it doesn't look like adding these plugins changes any command line invocations we already have built 👌
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Adding in the plugins needed to convert GTC files to BCF from https://github.com/freeseek/gtc2vcf
Needed in order to run the
popgen_genotypingpipeline.Also update the version of bcftools to 1.23