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@pnlbwh

Psychiatry Neuroimaging Lab @ BWH/HMS

Psychiatry Neuroimaging Lab at Brigham and Women's Hospital and Harvard Medical School

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  1. pnlNipype pnlNipype Public

    PNL pipeline for NIFTI images

    Python 12 15

  2. TBSS TBSS Public

    Tract based spatial statistics using ANTs and FSL

    Python 17 9

  3. luigi-pnlpipe luigi-pnlpipe Public

    NIFTI pipeline glued together using Luigi

    Python 8 6

  4. ukftractography ukftractography Public

    C 31 31

  5. multi-shell-dMRIharmonization multi-shell-dMRIharmonization Public

    Harmonization of multi-site, multi-shell diffusion MRI

    Python 13 5

  6. CNN-Diffusion-MRIBrain-Segmentation CNN-Diffusion-MRIBrain-Segmentation Public

    CNN based brain masking

    Python 19 11

Repositories

Showing 10 of 52 repositories
  • conversion Public

    Various mri conversion/modification scripts

    pnlbwh/conversion’s past year of commit activity
    Python 22 8 6 0 Updated Jan 15, 2026
  • luigi-pnlpipe Public

    NIFTI pipeline glued together using Luigi

    pnlbwh/luigi-pnlpipe’s past year of commit activity
    Python 8 6 4 0 Updated Nov 7, 2025
  • multi-shell-dMRIharmonization Public

    Harmonization of multi-site, multi-shell diffusion MRI

    pnlbwh/multi-shell-dMRIharmonization’s past year of commit activity
    Python 13 5 2 0 Updated Oct 16, 2025
  • pnlpipe-containers Public

    Containers for pnlpipe software

    pnlbwh/pnlpipe-containers’s past year of commit activity
    Python 1 4 1 0 Updated Sep 12, 2025
  • structuralQC Public

    Machine learning tool for checking goodness of an anatomical scan (T1/T2)

    pnlbwh/structuralQC’s past year of commit activity
    HTML 1 1 0 0 Updated Aug 6, 2025
  • CNN-Diffusion-MRIBrain-Segmentation Public

    CNN based brain masking

    pnlbwh/CNN-Diffusion-MRIBrain-Segmentation’s past year of commit activity
    Python 19 11 1 0 Updated Jun 11, 2025
  • ukftractography Public
    pnlbwh/ukftractography’s past year of commit activity
    C 31 31 10 0 Updated Jun 2, 2025
  • pnlNipype Public

    PNL pipeline for NIFTI images

    pnlbwh/pnlNipype’s past year of commit activity
    Python 12 15 22 0 Updated Jun 2, 2025
  • HD-BET Public Forked from MIC-DKFZ/HD-BET

    MRI brain extraction tool

    pnlbwh/HD-BET’s past year of commit activity
    Python 0 Apache-2.0 76 0 0 Updated May 29, 2025
  • HCPpipelines Public Forked from Washington-University/HCPpipelines

    Processing pipelines for the HCP

    pnlbwh/HCPpipelines’s past year of commit activity
    Shell 1 287 4 2 Updated May 19, 2025
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