Update README with gene collapsing and insert size commands.#18
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roryk wants to merge 4 commits intopmelsted:masterfrom
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Update README with gene collapsing and insert size commands.#18roryk wants to merge 4 commits intopmelsted:masterfrom
roryk wants to merge 4 commits intopmelsted:masterfrom
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This also renames the two helper scripts to be prefixed with pizzly. This way we can load them as binaries with bioconda which will help with incorporation as part of analysis pipelines. Closes pmelsted#17.
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I fixed the bioconda recipe to install the two python scripts as |
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I added the shebang to the top of the python scripts which will make them executable via the users default python without prepending with |
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I also fixed a bug in the fragment length script, where the cutoff was set as the default even if a cutoff was supplied. |
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ping! |
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Thanks, this pull request does two things. It updates the documentation to add the last step to collapse down to the gene level fusion calls. It also renames the two python scripts to be prepended with pizzly-- those scripts are pretty generically named so they might introduce some clashes if we install them as binaries in the conda package. Prepending them with pizzly will get around that. Thanks!