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12 changes: 6 additions & 6 deletions src/UnitigMap.tcc
Original file line number Diff line number Diff line change
Expand Up @@ -381,19 +381,19 @@ bool UnitigMap<U, G, is_const>::isCoverageFull() const {

if (isEmpty) return false; // nothing maps, move on

if (isShort) cdbg->km_unitigs.isFull(pos_unitig);
else if (isAbundant) cdbg->h_kmers_ccov.find(pos_unitig)->ccov.isFull();
else cdbg->v_unitigs[pos_unitig]->getCov().isFull();
if (isShort) return cdbg->km_unitigs.isFull(pos_unitig);
else if (isAbundant) return cdbg->h_kmers_ccov.find(pos_unitig)->ccov.isFull();
else return cdbg->v_unitigs[pos_unitig]->getCov().isFull();
}

template<typename U, typename G, bool is_const>
size_t UnitigMap<U, G, is_const>::getCoverage(const size_t pos) const {

if (isEmpty || (pos > size - cdbg->getK())) return 0; // nothing maps, move on

if (isShort) cdbg->km_unitigs.covAt(pos_unitig);
else if (isAbundant) cdbg->h_kmers_ccov.find(pos_unitig)->ccov.covAt(0);
else cdbg->v_unitigs[pos_unitig]->getCov().covAt(pos);
if (isShort) return cdbg->km_unitigs.covAt(pos_unitig);
else if (isAbundant) return cdbg->h_kmers_ccov.find(pos_unitig)->ccov.covAt(0);
else return cdbg->v_unitigs[pos_unitig]->getCov().covAt(pos);
}


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